Global Biogeochemical Cycles Research Articles

Community Structure, Drivers, and Potential Functions of Different Lifestyle Viruses in Chaohu Lake

Viruses, as the most prolific entities on Earth, constitute significant ecological groups within freshwater lakes, exerting pivotal ecological roles. In this study, we selected Chaohu Lake, a representative eutrophic freshwater lake in China, as our research site to explore the community distribution, driving mechanisms, and potential ecological functions of diverse viral communities, the intricate virus–host interaction systems, and the overarching influence of viruses on global biogeochemical cycling.

Single-cell RNA-seq of the rare virosphere reveals the native hosts of giant viruses in the marine environment.

Giant viruses (phylum Nucleocytoviricota) are globally distributed in aquatic ecosystems. They play fundamental roles as evolutionary drivers of eukaryotic plankton and regulators of global biogeochemical cycles. However, we lack knowledge about their native hosts, hindering our understanding of their life cycle and ecological importance. In the present study, we applied a single-cell RNA sequencing (scRNA-seq) approach to samples collected during an induced algal bloom, which enabled pairing active giant viruses with their native protist hosts. We detected hundreds of single cells from multiple host lineages infected by diverse giant viruses. These host cells included members of the algal groups Chrysophycae and Prymnesiophycae, as well as heterotrophic flagellates in the class Katablepharidaceae. Katablepharids were infected with a rare Imitervirales-07 giant virus lineage expressing a large repertoire of cell-fate regulation genes. Analysis of the temporal dynamics of these host-virus interactions revealed an important role for the Imitervirales-07 in controlling the population size of the host Katablepharid population. Our results demonstrate that scRNA-seq can be used to identify previously undescribed host-virus interactions and study their ecological importance and impact.

Light-induced degradation of dimethylmercury in different natural waters

Photo-induced degradation of dimethylmercury (DMHg) is considered to be an important source for the generation of methylmercury (MMHg). However, studies on DMHg photodegradation are scarce, and it is even debatable about whether DMHg can be degraded in natural waters. Herein, we found that both DMHg and MMHg could be photodegraded in three natural waters collected from the Yellow River Delta, while in pure water only DMHg photodegradation occurred under visible light irradiation. The effects of different environmental factors on DMHg photodegradation were investigated, and the underlying mechanisms were elucidated by density functional theory calculations and a series of control experiments. Our findings revealed that the DMHg degradation rate was higher in the tidal creek water compared to Yellow River, Yan Lake, and purified water. NO3-, NO2-, and DOM could promote the photodegradation with DOM and NO3- showing particularly strong positive effects. Different light sources were employed, and UV light was found to be more effective in DMHg photodegradation. Moreover, MMHg was detected during the photodegradation of DMHg, confirming that the photochemical demethylation of DMHg is a source of MMHg in sunlit water. This work may provide a novel mechanistic insight into the DMHg photodegradation in natural waters and enrich the study of the global biogeochemical cycle of Hg.

Nitrate-dependent anaerobic methane oxidation coupled to Fe(III) reduction as a source of ammonium and nitrous oxide

‘Candidatus Methanoperedens nitroreducens’ is an archaeal methanotroph with global importance that links carbon and nitrogen cycles and great potential for sustainable operation of wastewater treatment. It has been reported to mediate the anaerobic oxidation of methane through a reverse methanogenesis pathway while reducing nitrate to nitrite. Here, we demonstrate that ‘Ca. M. nitroreducens’ reduces ferric iron forming ammonium (23.1%) and nitrous oxide (N2O, 46.5%) from nitrate. These results are supported with the upregulation of genes coding for proteins responsible for dissimilatory nitrate reduction to ammonium (nrfA), N2O formation (norV, cyt P460), and multiple multiheme c-type cytochromes for ferric iron reduction. Concomitantly, an increase in the N2O-reducing SJA-28 lineage and a decrease in the nitrite-reducing ‘Candidatus Methylomirabilis oxyfera’ are consistent with the changes in ‘Ca. M. nitroreducens’ end products. These findings demonstrate the highly flexible physiology of ‘Ca. M. nitroreducens’ in anaerobic ecosystems with diverse electron acceptor conditions, and further reveals its roles in linking methane oxidation to global biogeochemical cycles. ‘Ca. M. nitroreducens’ could significantly affect the bioavailability of nitrogen sources as well as the emission of greenhouse gas in natural ecosystems and wastewater treatment plants.

Hydro-meteorological factors and inflowing nutrients drive water quality in an impounded lake of China's South-to-North Water Diversion Project.

Freshwater lakes play a vital role in global hydrological and biogeochemical cycles, serving various functions and maintaining ecological balance. However, freshwater resources are more vulnerable to deterioration due to multiple stressors. Gaoyou Lake is one of the impounded lakes of the Eastern route of South-to-North Water Diversion Project in China, and as an important source of drinking water, the lake has been routinely monitored. Long-term monitoring of water quality in Gaoyou Lake showed that concentrations of nutrients and chlorophyll a as well as trophic state in the water column increased while water transparency decreased, indicating that the water quality has declined during the last 12years. Specifically, there was a notable and statistically significant increase in chlorophyll a concentrations, averaging an annual rate of 9.9%. Despite a slight decline in trophic level index until 2014, subsequent years saw an upward trend, ranging from 50.7 to 56.4 and indicating a light eutrophic state. Spatially, the western area displayed higher nutrient and chlorophyll a concentrations. Changes in hydro-meteorological variables and nutrients from inflowing rivers were the main factors correlated with water quality in Gaoyou Lake. Thus, pollution source apportionment and management within Huaihe River basin should be considered to reduce the external loadings of nutrients in order to improve and sustain long-term water quality.

Microscale advection governs microbial growth and oxygen consumption in macroporous aggregates.

Most microbial life on Earth is found in localized microenvironments that collectively exert a crucial role in maintaining ecosystem health and influencing global biogeochemical cycles. In many habitats such as biofilms in aquatic systems, bacterial flocs in activated sludge, periphyton mats, or particles sinking in the ocean, these microenvironments experience sporadic or continuous flow. Depending on their microscale structure, pores and channels through the microenvironments permit localized flow that shifts the relative importance of diffusive and advective mass transport. How this flow alters nutrient supply, facilitates waste removal, drives the emergence of different microbial niches, and impacts the overall function of the microenvironments remains unclear. Here, we quantify how pores through microenvironments that permit flow can elevate nutrient supply to the resident bacterial community using a microfluidic experimental system and gain further insights from coupled population-based and computational fluid dynamics simulations. We find that the microscale structure determines the relative contribution of advection vs diffusion, and even a modest flow through a pore in the range of 10 µm s-1 can increase the carrying capacity of a microenvironment by 10%. Recognizing the fundamental role that microbial hotspots play in the Earth system, developing frameworks that predict how their heterogeneous morphology and potential interstitial flows change microbial function and collectively alter global scale fluxes is critical.IMPORTANCEMicrobial life is a key driver of global biogeochemical cycles. Similar to the distribution of humans on Earth, they are often not homogeneously distributed in nature but occur in dense clusters that resemble microbial cities. Within and around these clusters, diffusion is often assumed as the sole mass-transfer process that dictates nutrient supply and waste removal. In many natural and engineered systems such as biofilms in aquatic environments, aggregates in bioremediation, or flocs in wastewater treatment plants, these clusters are exposed to flow that elevates mass transfer, a process that is often overlooked. In this study, we show that advective fluxes can increase the local growth of bacteria in a single microenvironment by up to 50% and shape their metabolism by disrupting localized anoxia or supplying nutrients at different rates. Collectively, advection-enhanced mass transport may thus regulate important biogeochemical transformations in both natural and engineered environments.

Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis

Methanogenic archaea inhabiting anaerobic environments play a crucial role in the global biogeochemical material cycle. The most universal electrogenic reaction of their methane-producing energy metabolism is catalyzed by N    5-methyl-tetrahydromethanopterin: coenzyme M methyltransferase (MtrABCDEFGH), which couples the vectorial Na+ transport with a methyl transfer between the one-carbon carriers tetrahydromethanopterin and coenzyme M via a vitamin B12 derivative (cobamide) as prosthetic group. We present the 2.08 Å cryo-EM structure of Mtr(ABCDEFG)3 composed of the central Mtr(ABFG)3 stalk symmetrically flanked by three membrane-spanning MtrCDE globes. Tetraether glycolipids visible in the map fill gaps inside the multisubunit complex. Putative coenzyme M and Na+ were identified inside or in a side-pocket of a cytoplasmic cavity formed within MtrCDE. Its bottom marks the gate of the transmembrane pore occluded in the cryo-EM map. By integrating Alphafold2 information, functionally competent MtrA-MtrH and MtrA-MtrCDE subcomplexes could be modeled and thus the methyl-tetrahydromethanopterin demethylation and coenzyme M methylation half-reactions structurally described. Methyl-transfer-driven Na+ transport is proposed to be based on a strong and weak complex between MtrCDE and MtrA carrying vitamin B12, the latter being placed at the entrance of the cytoplasmic MtrCDE cavity. Hypothetically, strongly attached methyl-cob(III)amide (His-on) carrying MtrA induces an inward-facing conformation, Na+ flux into the membrane protein center and finally coenzyme M methylation while the generated loosely attached (or detached) MtrA carrying cob(I)amide (His-off) induces an outward-facing conformation and an extracellular Na+ outflux. Methyl-cob(III)amide (His-on) is regenerated in the distant active site of the methyl-tetrahydromethanopterin binding MtrH implicating a large-scale shuttling movement of the vitamin B12-carrying domain.

Biogeochemistry of dissolved organic matter and inorganic solutes in soil profiles of tropical pasturelands

Tropical soils play a critical role in the global biogeochemical cycles and are essential for maintaining the Earth's carbon balance. Understanding the dynamics of dissolved organic matter (DOM) is paramount due to its implications for ecosystem functioning and nutrient cycling. This study comprehensively evaluated the origin, distribution, and composition of DOM and inorganic solutes in Brazilian tropical agricultural soils. Multiple analytical techniques were utilized to assess DOM from soil profiles (0–100 cm depth) across a spectrum of land uses, including a native Atlantic Forest, a degraded pasture, as well as intensive grazing, extensive grazing, and silvopastoral systems. Inorganic elements were quantified to assess the coupling between the organic and inorganic biogeochemical cycles. The dominance of C4 carbon in topsoil layers suggested substantial contributions of organic matter from grasses to the soil organic matter pool. However, with increased depth, C3 carbon inputs became more prominent, indicating the influence of forest vegetation that existed prior to the implementation of agricultural managements. DOM concentrations decreased with soil depth due to reduced carbon inputs, sorption to minerals, or oxidation. DOM composition did not show significant changes among different land use and managements. Lignin was identified as the primary contributor to oxidized DOM with increasing soil depth. The composition of DOM exhibited a shift from more aromatic and higher molecular weight compounds in topsoil layers to smaller, more aliphatic compounds in subsoil layers. Our key findings revealed that aliphatic compounds, particularly fatty acids, tend to accumulate in deeper soil layers. This phenomenon was consistent in pastures dominated by grasses but not in soils near treed vegetation. Overseeding (from C3 plants) did not significantly impact DOM compositions, emphasizing the persistence of C4 plants in these systems. The presence of inorganic elements in soil water extracts showed minimal impact on DOM dynamics, suggesting decoupled organic and inorganic biogeochemical cycles in tropical pasturelands.

Life cycle assessment of ammonium sulfate recovery from urban wastewater

ABSTRACT Anthropogenic nitrogen fluxes are profoundly altering the global biogeochemical nitrogen cycle. Better management of these nitrogen fluxes is essential. Recovering nitrogen from urban wastewater reduces both the energy and resources required to produce nitrogen-based fertilizer and to remove nitrogen from wastewater collected. Nitrogen can be recovered from wastewater in the form of ammonium sulfate, a common nitrogen-based fertilizer. In the urban setting, the technology can be applied to target source-separated urine or municipal wastewater. To assess the environmental sustainability of this approach, this study compared the life cycle environmental impacts of ammonium sulfate recovered from urban wastewater (through eight different recovery technology trains) and ammonium sulfate produced by six different industrial processes. The results show that wastewater-derived ammonium sulfate generally has lower potential environmental impacts than industrially produced ammonium sulfate in most of the impact categories assessed. The impact for the source-separated urine centralized recovery train is the smallest. The contribution analysis shows that energy, sulfuric acid and sodium hydroxide use are the major contributors, while the background inventory analysis shows that the results can be sensitive to the choice of region-specific background inventory. In the future, nitrogen recovery from urban wastewater is promising for the circular economy in cities.

The community background alters the evolution of thermal performance

Abstract Microbes are key drivers of global biogeochemical cycles, and their functional roles arey dependent on temperature. Large population sizes and rapid turnover rates mean that the predominant response of microbes to environmental warming is likely to be evolutionary, yet our understanding of evolutionary responses to temperature change in microbial systems is rudimentary. Natural microbial communities are diverse assemblages of interacting taxa. However, most studies investigating the evolutionary response of bacteria to temperature change are focused on monocultures. Here, we utilize high-throughput experimental evolution of bacteria in both monoculture and community contexts along a thermal gradient to determine how interspecific interactions influence the thermal adaptation of community members. We found that community-evolved isolates tended toward higher maximum growth rates across the temperature gradient compared to their monoculture-evolved counterparts. We also saw little evidence of systematic evolutionary change in the shapes of bacterial thermal tolerance curves along the thermal gradient. However, the effect of community background and selection temperature on the evolution of thermal tolerance curves was variable and highly taxon-specific,with some taxa exhibiting pronounced changes in thermal tolerance while others were less impacted. We also found that temperature acted as a strong environmental filter, resulting in the local extinction of taxa along the thermal gradient, implying that temperature-driven ecological change was a key factor shaping the community background upon which evolutionary selection can operate. These findings offer novel insight into how community background impacts thermal adaptation.

A global estimate of monthly vegetation and soil fractions from spatiotemporally adaptive spectral mixture analysis during 2001–2022

Abstract. Multifaceted regime shifts of Earth's surface are ongoing dramatically and – in turn – considerably alter the global carbon budget, energy balance and biogeochemical cycles. Sustainably managing terrestrial ecosystems necessitates a deeper comprehension of the diverse and dynamic nature of multicomponent information within these environments. However, comprehensive records of global-scale fractional vegetation and soil information that encompass these structural and functional complexities remain limited. Here, we provide a globally comprehensive record of monthly vegetation and soil fractions during the period 2001–2022 using a spatiotemporally adaptive spectral mixture analysis framework. This product is designed to continuously represent Earth's terrestrial surface as a percentage of five physically meaningful vegetation and soil endmembers, including photosynthetic vegetation (PV), nonphotosynthetic vegetation (NPV), bare soil (BS), ice or snow (IS) and dark surface (DA), with high accuracy and low uncertainty compared to the previous vegetation index and vegetation continuous-field product as well as traditional fully constrained linear spectral mixture models. We also adopt nonparametric seasonal Mann–Kendall tested fractional dynamics to identify shifts based on interactive changes in these fractions. Our results – superior to previous portrayals of the greening planet – not only report a +9.35 × 105 km2 change in photosynthetic vegetation, but also explore decreases in nonphotosynthetic vegetation (−2.19 × 105 km2), bare soil (−5.14 × 105 km2) and dark surfaces (−2.27 × 105 km2). In addition, interactive changes in these fractions yield multifaceted regime shifts with important implications, such as a simultaneous increase in PV and NPV in central and southwestern China during afforestation activities, an increase in PV in cropland of China and India due to intensive agricultural development, a decrease in PV and an increase in BS in tropical zones resulting from deforestation. These advantages emphasize that our dataset provides locally relevant information on multifaceted regime shifts at the required scale, enabling scalable modeling and effective governance of future terrestrial ecosystems. The data about five fractional surface vegetation and soil components are available in the Science Data Bank (https://doi.org/10.57760/sciencedb.13287, Sun and Sun, 2023).

Balance and imbalance in biogeochemical cycles reflect the operation of closed, exchange, and open sets

Biogeochemical reactions modulate the chemical composition of the oceans and atmosphere, providing feedbacks that sustain planetary habitability over geological time. Here, we mathematically evaluate a suite of biogeochemical processes to identify combinations of reactions that stabilize atmospheric carbon dioxide by balancing fluxes of chemical species among the ocean, atmosphere, and geosphere. Unlike prior modeling efforts, this approach does not prescribe functional relationships between the rates of biogeochemical processes and environmental conditions. Our agnostic framework generates three types of stable reaction combinations: closed sets, where sources and sinks mutually cancel for all chemical reservoirs; exchange sets, where constant ocean-atmosphere conditions are maintained through the growth or destruction of crustal reservoirs; and open sets, where balance in alkalinity and carbon fluxes is accommodated by changes in other chemical components of seawater or the atmosphere. These three modes of operation have different characteristic timescales and may leave distinct evidence in the rock record. To provide a practical example of this theoretical framework, we applied the model to recast existing hypotheses for Cenozoic climate change based on feedbacks or shared forcing mechanisms. Overall, this work provides a systematic and simplified conceptual framework for understanding the function and evolution of global biogeochemical cycles.

Niche differentiation and biogeography of Bathyarchaeia in paddy soil ecosystems: a case study in eastern China

Bathyarchaeia (formerly Bathyarchaeota) is a group of highly abundant archaeal communities that play important roles in global biogeochemical cycling. Bathyarchaeia is predominantly found in sediments and hot springs. However, their presence in arable soils is relatively limited. In this study, we aimed to investigate the spatial distributions and diversity of Bathyarchaeia in paddy soils across eastern China, which is a major rice production region. The relative abundance of Bathyarchaeia among total archaea ranged from 3 to 68% in paddy soils, and Bathy-6 was the dominant subgroup among the Bathyarchaeia (70–80% of all sequences). Bathyarchaeia showed higher migration ability and wider niche width based on the neutral and null model simulations. Bathy-6 was primarily assembled by deterministic processes. Soil pH and C/N ratio were identified as key factors influencing the Bathyarchaeia composition, whereas C/N ratio and mean annual temperature influenced the relative abundance of Bathyarchaeia. Network analysis showed that specific Bathyarchaeia taxa occupied keystone positions in the archaeal community and co-occurred with some methanogenic archaea, including Methanosarcina and Methanobacteria, and ammonia-oxidizing archaea belonging to Nitrososphaeria. This study provides important insights into the biogeography and niche differentiation of Bathyarchaeia particularly in paddy soil ecosystems.

Integrating Trait‐Based Stoichiometry in a Biogeochemical Inverse Model Reveals Links Between Phytoplankton Physiology and Global Carbon Export

AbstractThe elemental ratios of carbon, nitrogen, and phosphorus (C:N:P) within organic matter play a key role in coupling biogeochemical cycles in the global ocean. At the cellular level, these ratios are controlled by physiological responses to the environment. But linking these cellular‐level processes to global biogeochemical cycles remains challenging. We present a novel model framework that combines knowledge of phytoplankton cellular functioning with global scale hydrographic data, to assess the role of variable carbon‐to‐phosphorus ratios (RC:P) on the distribution of export production. We implement a trait‐based mechanistic model of phytoplankton growth into a global biogeochemical inverse model to predict global patterns of phytoplankton physiology and stoichiometry that are consistent with both biological growth mechanisms and hydrographic carbon and nutrient observations. We compare this model to empirical parameterizations relating RC:P to temperature or phosphate concentration. We find that the way the model represents variable stoichiometry affects the magnitude and spatial pattern of carbon export, with globally integrated fluxes varying by up to 10% (1.3 Pg C yr−1) across models. Despite these differences, all models exhibit strong consistency with observed dissolved inorganic carbon and phosphate concentrations (R2 > 0.9), underscoring the challenge of selecting the most accurate model structure. We also find that the choice of parameterization impacts the capacity of changing RC:P to buffer predicted export declines. Our novel framework offers a pathway by which additional biological information might be used to reduce the structural uncertainty in model representations of phytoplankton stoichiometry, potentially improving our capacity to project future changes.

Controls on distributions of aluminium, manganese and cobalt in the South Atlantic Ocean along GEOTRACES transect GA10

Trace metals (TMs) manganese (Mn), cobalt (Co), and aluminium (Al) have important geochemical and biological roles in the ocean. Here, we present full depth profiles of dissolved (d) and particulate Al, Mn, and Co along the latitude of 40 °S in the South Atlantic Ocean from the GEOTRACES GA10 cruises that operated in austral spring 2010 and summer 2011. The region is characterized by enhanced primary productivity and forms a key transition zone between the Southern Ocean and South Atlantic Subtropical Gyre. The mean concentrations of dAl, dCo, and dMn (±standard deviation) were 3.36 ± 2.65 nmol kg−1, 35.3 ± 17.6 pmol kg−1, and 0.624 ± 1.08 nmol kg−1, respectively. Their distributions in surface waters were determined by external sources and complex internal biogeochemical processes. Specifically, surface ocean dCo was controlled by the interplay between phytoplankton uptake, remineralization and external inputs; dMn was likely determined by the formation and photoreduction of Mn-oxides; and dAl was supplied by atmospheric deposition and removed by scavenging onto particles. Fluvial and sedimentary inputs near the Rio de La Plata estuary and benthic sources from the Agulhas Bank resulted in elevated dTM concentrations in near-shore surface waters. These externally sourced dTMs were effectively delivered to the open ocean by offshore diffusion and/or advection, and potentially facilitated enhanced primary productivity along the transect.The distributions of dTMs at depth were predominantly controlled by the mixing of North Atlantic Deep Water (NADW) and waters of Antarctic origin (e.g., Upper Circumpolar Water (UCDW) and Antarctic Bottom Water (AABW)). The calculated endmember concentrations of dAl and dCo in NADW showed minor decreases in the SASTG following north–south transport, suggesting removal rates of 0.064 nM/year and 0.035–0.075 pM/year, respectively. The endmember concentration of dCo in AABW was maintained at ∼30 pmol kg−1 without evidence for scavenging removal in the Southern Ocean and SASTG (time frame >400 years). The concentrations of dMn in NADW and AABW were between 0.1 and 0.16 nmol kg−1, and any elevated dMn concentrations were ascribed to local external inputs (e.g., from sediments in the Argentine Basin and hydrothermal activity near the Mid-Atlantic Ridge). Hence, four controlling factors (sources, internal cycling, water mass mixing and time) need to be considered when assessing TM distributions in the global ocean, even for TMs that are vulnerable to scavenging removal processes. Because the deep waters formed in high latitude oceans are crucial components of the global thermohaline overturning system, any processes (e.g., glacier melting, upwelling and sinking, and biological activity) that impact the preformed dTM concentrations in high latitude oceans will determine the downstream dTM distributions. Therefore, the sources and sinks of TMs and associated biological activity in high latitude oceans could engender basin to global scale impacts on seawater distributions of Al, Co, and Mn and their stoichiometric relationships with macronutrients, and the global biogeochemical cycles of these scavenged-type TMs.

Eastern Canadian boreal forest soil and foliar chemistry show evidence of resilience to long-term nitrogen addition.

The boreal forest is one of the world's largest terrestrial biome and plays crucial roles in global biogeochemical cycles, such as carbon (C) sequestration in vegetation and soil. However, the impacts of decades of N deposition on N-limited ecosystems, like the eastern Canadian boreal forest, remain unclear. For 13 years, N deposition was simulated by periodically adding ammonium nitrate on soils of two boreal coniferous forests (i.e., balsam fir and black spruce) of eastern Canada, at low (LN) and high (HN) rates, corresponding to 3 and 10 times the ambient N deposition, respectively. We show that more than a decade of N addition had no strong effects on mineral soil C, N, P, and cation concentrations and on foliar total Ca, K, Mg, and Mn concentrations. In organic soil, C stock was not affected by N addition while N stock increased, and exchangeable Ca2+ and Mg2+ decreased at the balsam fir site under HN treatment. At both sites, LN treatment had nearly no impact on foliage and soil chemistry but foliar N and N:P significantly increased under HN treatment, potentially leading to foliar nutrient imbalance. Overall, our work indicates that, in the eastern Canadian boreal forest, soil and foliar nutrient concentrations and stocks are resilient to increasing N deposition potentially because, in the context of N limitation, extra N would be rapidly immobilized by soil micro-organisms and vegetation. These findings could improve modeling future boreal forest soil C stocks and biomass growth and could help in planning forest management strategies in eastern Canada.

Monitoring Spatial–Temporal Variations in River Width in the Aral Sea Basin with Sentinel-2 Imagery

Rivers in arid regions serve as crucial freshwater resources for local communities and play an essential role in global hydrological and biogeochemical cycles. The Aral Sea Basin (ASB) in Central Asia is characterized by an arid climate and river dynamics that are sensitive to climate change and human activities. Monitoring the spatiotemporal variations in river water extent in the ASB is essential to maintain an ecological balance and ensure water security. In this study, we extracted data regarding monthly river water bodies in the ASB from 2017 to 2022 by synthesizing monthly Sentinel-2 images. The water extents on the Sentinel images were automatically mapped using the Otsu method, and the river widths for all river channels were calculated using the RivWidth algorithm. We investigated the relationships between the river dynamics and the geomorphology, climatic change, human activities, and the annual and interannual variations in the river width in different reaches of the basin. The results show a seasonal variability in the river width, with most rivers reaching the largest width in the warm season and a few rivers in the middle and lower areas reaching the valley value in the warm season. Compared to their tributaries, the mainstem in the middle/lower regions showed less seasonal variability. According to interannual analysis, most of the rivers in the ASB significantly narrowed between 2017 and 2022, a phenomenon which is generally impacted by temperature and evapotranspiration variations. Comparisons show that our results provide improved information about the narrow river reaches and denser river networks compared to the previous global dataset, demonstrating the advantageous properties of high spatial resolution in Sentinel-2 imagery.

River network‐scale drying impacts the spatiotemporal dynamics of greenhouse gas fluxes

AbstractRivers significantly contribute to global biogeochemical cycles; however, we have a limited understanding of how drying may influence these cycles. Drying fragments river networks, thereby influencing important ecosystem functions such as the processing of carbon and nitrogen, and associated fluxes of greenhouse gases (GHGs) both locally, and at the river network scale. Our objective was to assess, using a network‐scale approach, the lateral, longitudinal, and temporal dynamics of GHG fluxes in a river network naturally fragmented by drying. We used a closed‐loop chamber with automated analyzers to measure carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) fluxes from dry sediments, flowing waters, isolated pools, and riparian soils, along with a suite of environmental variables, over 9 months at 20 sites across a non‐perennial river network in France. Network‐scale drying had a spatial and temporal legacy effect on GHG fluxes. On average, CO2 fluxes were up to 29 times higher from perennial than non‐perennial sites under flowing conditions. At non‐perennial sites, CO2 and N2O fluxes positively covaried with time since rewetting. In addition, CO2 and N2O fluxes at perennial sites positively covaried with the percent of non‐perennial reaches upstream, indicating a spatial effect of drying. GHG fluxes from riparian soil and dry riverbed sediments had markedly different magnitudes and covariates. This research demonstrates that drying not only has a local‐scale impact but also influences GHG fluxes at the network scale, contributing valuable insights for upscaling global riverine GHG estimates.

Coupled carbon‑iron‑phosphorus cycling in the Rainbow hydrothermal vent field

Hydrothermal venting has been shown to play a role in the global biogeochemical cycles of three bio-essential elements: iron (Fe), carbon (C) and phosphorus (P). However, our insight into the coupled cycling of Fe and associated C and P in hydrothermal plumes as well as their long-term fate in the underlying sediments remains limited. We present a detailed study, tracing the biogeochemical pathways of hydrothermally sourced Fe and the associated C and P from a buoyant to a neutrally buoyant plume and to the underlying sediments. Combining chemical and micro(spectro)scopic methods, we characterize particulate and dissolved phases recovered from the water column and sediment at two sites: one located directly in the active Rainbow hydrothermal vent field at 36°N on the mid-Atlantic ridge (MAR) and one located 3 km NE of the active vents. Our results show that the precipitates in one of the largest hydrothermal plumes on the MAR consist of aggregates of Fe nanoparticles, comprising poorly-ordered Fe oxyhydroxides and polycrystalline Fe sulfides, coated with carbon that is likely of organic origin. The sediments underlying the hydrothermal plume show enrichments in organic C, Fe, P and vent-derived trace metals such as Cu that decrease with distance from active vents. The enrichment in organic C and persistence of apparently highly-reactive Fe phases after sediment burial may reflect enhanced preservation potential of both phases as a result of the formation of organic-mineral complexes. We further demonstrate that the scavenging of dissolved seawater phosphate (PO43−) by Fe nanoparticles is constrained to early stages of particle formation and sorption reactions in the buoyant hydrothermal plume and that P burial close to the vent field is driven by the deposition of the Fe nanoparticles. In the sediment, P is then efficiently retained through sink-switching from Fe-bound to more stable, authigenic apatite phases. As such, the sediments underlying the Rainbow vent seem to faithfully record coupled emission, scavenging and burial of essential elements and therefore offer potential for reconstruction of past venting activity. The deposition and burial of partly reduced plume material (e.g., Fe sulfides) in an oxic deep-sea sediment results in sediment chemistry and diagenesis that is very specific to the hydrothermal environment, while the redox signature of the plume is gradually lost. Beyond its role as a potential source of bioavailable Fe, we highlight how hydrothermal venting represents an efficient sink for organic C and bioavailable P. The findings contribute to understanding the profound impact of geological episodes of increased hydrothermal activity on ocean biogeochemistry and the coupled ocean-climate system.

Identification of structural and regulatory cell-shape determinants in Haloferax volcanii

Archaea play indispensable roles in global biogeochemical cycles, yet many crucial cellular processes, including cell-shape determination, are poorly understood. Haloferax volcanii, a model haloarchaeon, forms rods and disks, depending on growth conditions. Here, we used a combination of iterative proteomics, genetics, and live-cell imaging to identify mutants that only form rods or disks. We compared the proteomes of the mutants with wild-type cells across growth phases, thereby distinguishing between protein abundance changes specific to cell shape and those related to growth phases. The results identified a diverse set of proteins, including predicted transporters, transducers, signaling components, and transcriptional regulators, as important for cell-shape determination. Through phenotypic characterization of deletion strains, we established that rod-determining factor A (RdfA) and disk-determining factor A (DdfA) are required for the formation of rods and disks, respectively. We also identified structural proteins, including an actin homolog that plays a role in disk-shape morphogenesis, which we named volactin. Using live-cell imaging, we determined volactin’s cellular localization and showed its dynamic polymerization and depolymerization. Our results provide insights into archaeal cell-shape determination, with possible implications for understanding the evolution of cell morphology regulation across domains.